Here is the association table of sample names and conditions, colored with respect to condition color used in figures.

File.names Conditions
SCV028 MOI_50
SCV029 MOI_500
SCV030 MOI_5000

The Aim of Distriburion Analysis

This part of document includes figures representing the distribution of labels associated with samples. Can give idea about percentage distributions of classes (like: “no signal”, “infection”, “infection&lysis”) and distribution of problematic samples (like: “dirt”, “dried out”, “multiple infections”)

Distibutions

Here once more the figures side by side

Distribution of DDOM

The Aim of Single Variable Analysis

This part of document includes single variable figures associated with samples. We focus on 5 parameters: maximum, shape, midpoint, infection time, start point. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases.

For each figure we include tables showing p-values from t.test, Mann-Whitney U Test (wilcox.test), ,ean differences between conditions and the effect size. The tables also show the sample size for each condition.

Maximum

ttest. adjusted p values

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 0.56553 80
MOI_500 1.00000 1.00000 0.40656 119
MOI_5000 0.56553 0.40656 1.00000 176
numSamples 80 119 176

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 0.70422 80
MOI_500 1.00000 1.00000 0.59274 119
MOI_5000 0.70422 0.59274 1.00000 176
numSamples 80 119 176

Diffrence between means

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.03360 0.15162 80
MOI_500 0.03360 0.00000 0.18522 119
MOI_5000 0.15162 0.18522 0.00000 176
numSamples 80 119 176

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.741e-01 4.295e-01 4.226e-01 80
MOI_500 4.295e-01 3.816e-01 3.690e-01 119
MOI_5000 4.226e-01 3.690e-01 3.483e-01 176
numSamples 80 119 176

ttest. adjusted p values

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 43
MOI_500 1.00000 1.00000 1.00000 75
MOI_5000 1.00000 1.00000 1.00000 148
numSamples 43 75 148

Mann-Whitney U Test, adjusted p values

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 43
MOI_500 1.00000 1.00000 1.00000 75
MOI_5000 1.00000 1.00000 1.00000 148
numSamples 43 75 148

Diffrence between means

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.02606 0.01230 43
MOI_500 0.02606 0.00000 0.01376 75
MOI_5000 0.01230 0.01376 0.00000 148
numSamples 43 75 148

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 7.235e-01 6.037e-01 5.786e-01 43
MOI_500 6.037e-01 4.819e-01 4.466e-01 75
MOI_5000 5.786e-01 4.466e-01 3.884e-01 148
numSamples 43 75 148

ttest. adjusted p values

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.75261 1.00000 37
MOI_500 0.75261 1.00000 0.75261 44
MOI_5000 1.00000 0.75261 1.00000 28
numSamples 37 44 28

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.52383 1.00000 37
MOI_500 0.52383 1.00000 0.52383 44
MOI_5000 1.00000 0.52383 1.00000 28
numSamples 37 44 28

Diffrence between means

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.18115 0.00607 37
MOI_500 0.18115 0.00000 0.17508 44
MOI_5000 0.00607 0.17508 0.00000 28
numSamples 37 44 28

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 5.050e-01 4.888e-01 5.641e-01 37
MOI_500 4.888e-01 4.715e-01 5.488e-01 44
MOI_5000 5.641e-01 5.488e-01 6.231e-01 28
numSamples 37 44 28

Here are the figures side by side

Following is the violin graph representing the distribution of maximums

Slope

ttest. adjusted p values

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.03224 0.00000 80
MOI_500 0.03224 1.00000 0.00126 119
MOI_5000 0.00000 0.00126 1.00000 176
numSamples 80 119 176

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.01004 0.00000 80
MOI_500 0.01004 1.00000 0.00996 119
MOI_5000 0.00000 0.00996 1.00000 176
numSamples 80 119 176

Diffrence between means

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.17062 0.49959 80
MOI_500 0.17062 0.00000 0.32897 119
MOI_5000 0.49959 0.32897 0.00000 176
numSamples 80 119 176

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.681e-01 2.567e-01 3.972e-01 80
MOI_500 2.567e-01 2.402e-01 3.551e-01 119
MOI_5000 3.972e-01 3.551e-01 4.055e-01 176
numSamples 80 119 176

ttest. adjusted p values

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.48184 0.00936 43
MOI_500 0.48184 1.00000 0.02364 75
MOI_5000 0.00936 0.02364 1.00000 148
numSamples 43 75 148

Mann-Whitney U Test, adjusted p values

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.15702 0.03750 43
MOI_500 0.15702 1.00000 0.91684 75
MOI_5000 0.03750 0.91684 1.00000 148
numSamples 43 75 148

Diffrence between means

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.11810 0.40264 43
MOI_500 0.11810 0.00000 0.28454 75
MOI_5000 0.40264 0.28454 0.00000 148
numSamples 43 75 148

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.363e-01 3.545e-01 5.534e-01 43
MOI_500 3.545e-01 2.729e-01 4.383e-01 75
MOI_5000 5.534e-01 4.383e-01 4.695e-01 148
numSamples 43 75 148

ttest. adjusted p values

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.18531 0.00636 37
MOI_500 0.18531 1.00000 0.82680 44
MOI_5000 0.00636 0.82680 1.00000 28
numSamples 37 44 28

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.37404 0.00738 37
MOI_500 0.37404 1.00000 0.10944 44
MOI_5000 0.00738 0.10944 1.00000 28
numSamples 37 44 28

Diffrence between means

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.15866 0.24053 37
MOI_500 0.15866 0.00000 0.08187 44
MOI_5000 0.24053 0.08187 0.00000 28
numSamples 37 44 28

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.478e-01 3.146e-01 2.397e-01 37
MOI_500 3.146e-01 4.027e-01 3.825e-01 44
MOI_5000 2.397e-01 3.825e-01 3.199e-01 28
numSamples 37 44 28

Here are the figures side by side

Following is the violin graph representing the distribution of slopes

Midpoint

ttest. adjusted p values

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.03402 0.00000 80
MOI_500 0.03402 1.00000 0.00000 119
MOI_5000 0.00000 0.00000 1.00000 176
numSamples 80 119 176

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00216 0.00000 80
MOI_500 0.00216 1.00000 0.00000 119
MOI_5000 0.00000 0.00000 1.00000 176
numSamples 80 119 176

Diffrence between means

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.31864 3.47397 80
MOI_500 1.31864 0.00000 2.15532 119
MOI_5000 3.47397 2.15532 0.00000 176
numSamples 80 119 176

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.223e+00 1.969e+00 1.529e+00 80
MOI_500 1.969e+00 1.707e+00 1.282e+00 119
MOI_5000 1.529e+00 1.282e+00 8.279e-01 176
numSamples 80 119 176

ttest. adjusted p values

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.40828 0.00012 43
MOI_500 0.40828 1.00000 0.00057 75
MOI_5000 0.00012 0.00057 1.00000 148
numSamples 43 75 148

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.15258 0.00000 43
MOI_500 0.15258 1.00000 0.00000 75
MOI_5000 0.00000 0.00000 1.00000 148
numSamples 43 75 148

Diffrence between means

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.57005 1.80827 43
MOI_500 0.57005 0.00000 1.23822 75
MOI_5000 1.80827 1.23822 0.00000 148
numSamples 43 75 148

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.823e+00 1.623e+00 1.396e+00 43
MOI_500 1.623e+00 1.392e+00 1.150e+00 75
MOI_5000 1.396e+00 1.150e+00 8.942e-01 148
numSamples 43 75 148

ttest. adjusted p values

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.20926 0.00000 37
MOI_500 0.20926 1.00000 0.00024 44
MOI_5000 0.00000 0.00024 1.00000 28
numSamples 37 44 28

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.03134 0.00000 37
MOI_500 0.03134 1.00000 0.00000 44
MOI_5000 0.00000 0.00000 1.00000 28
numSamples 37 44 28

Diffrence between means

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.65947 5.16850 37
MOI_500 1.65947 0.00000 3.50903 44
MOI_5000 5.16850 3.50903 0.00000 28
numSamples 37 44 28

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 3.707e+00 3.701e+00 3.190e+00 37
MOI_500 3.701e+00 3.672e+00 3.276e+00 44
MOI_5000 3.190e+00 3.276e+00 2.231e+00 28
numSamples 37 44 28

Here are the figures side by side

Following is the violin graph representing the distribution of midpoints

Infection Time

ttest. adjusted p values

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00216 0.00000 80
MOI_500 0.00216 1.00000 0.00360 119
MOI_5000 0.00000 0.00360 1.00000 176
numSamples 80 119 176

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00003 0.00000 80
MOI_500 0.00003 1.00000 0.00842 119
MOI_5000 0.00000 0.00842 1.00000 176
numSamples 80 119 176

Diffrence between means

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.35572 2.08096 80
MOI_500 1.35572 0.00000 0.72525 119
MOI_5000 2.08096 0.72525 0.00000 176
numSamples 80 119 176

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.717e+00 1.381e+00 1.137e+00 80
MOI_500 1.381e+00 1.044e+00 7.944e-01 119
MOI_5000 1.137e+00 7.944e-01 5.308e-01 176
numSamples 80 119 176

ttest. adjusted p values

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.17054 0.00966 43
MOI_500 0.17054 1.00000 0.14592 75
MOI_5000 0.00966 0.14592 1.00000 148
numSamples 43 75 148

Mann-Whitney U Test, adjusted p values

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.01554 0.00006 43
MOI_500 0.01554 1.00000 0.12218 75
MOI_5000 0.00006 0.12218 1.00000 148
numSamples 43 75 148

Diffrence between means

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.75314 1.27035 43
MOI_500 0.75314 0.00000 0.51721 75
MOI_5000 1.27035 0.51721 0.00000 148
numSamples 43 75 148

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.876e+00 1.536e+00 1.224e+00 43
MOI_500 1.536e+00 1.196e+00 8.884e-01 75
MOI_5000 1.224e+00 8.884e-01 5.826e-01 148
numSamples 43 75 148

ttest. adjusted p values

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.01641 0.00024 37
MOI_500 0.01641 1.00000 0.15738 44
MOI_5000 0.00024 0.15738 1.00000 28
numSamples 37 44 28

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00351 0.00012 37
MOI_500 0.00351 1.00000 0.48668 44
MOI_5000 0.00012 0.48668 1.00000 28
numSamples 37 44 28

Diffrence between means

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.90018 2.69613 37
MOI_500 1.90018 0.00000 0.79595 44
MOI_5000 2.69613 0.79595 0.00000 28
numSamples 37 44 28

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.815e+00 2.385e+00 2.302e+00 37
MOI_500 2.385e+00 1.934e+00 1.747e+00 44
MOI_5000 2.302e+00 1.747e+00 1.251e+00 28
numSamples 37 44 28

Here are the figures side by side

Following is the violin graph representing the distribution of infection time

Start point

ttest. adjusted p values

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.44920 0.00000 80
MOI_500 0.44920 1.00000 0.00000 119
MOI_5000 0.00000 0.00000 1.00000 176
numSamples 80 119 176

Mann-Whitney U Test, adjusted p values

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.07598 0.00000 80
MOI_500 0.07598 1.00000 0.00000 119
MOI_5000 0.00000 0.00000 1.00000 176
numSamples 80 119 176

Diffrence between means

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.64078 2.43348 80
MOI_500 0.64078 0.00000 1.79270 119
MOI_5000 2.43348 1.79270 0.00000 176
numSamples 80 119 176

effect size needed for Power = 0.95 and sig.level = 0.05

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.081e+00 1.906e+00 1.470e+00 80
MOI_500 1.906e+00 1.712e+00 1.299e+00 119
MOI_5000 1.470e+00 1.299e+00 8.616e-01 176
numSamples 80 119 176

ttest. adjusted p values

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 0.00921 43
MOI_500 1.00000 1.00000 0.00921 75
MOI_5000 0.00921 0.00921 1.00000 148
numSamples 43 75 148

Mann-Whitney U Test, adjusted p values

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.60182 0.00000 43
MOI_500 0.60182 1.00000 0.00000 75
MOI_5000 0.00000 0.00000 1.00000 148
numSamples 43 75 148

Diffrence between means

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.19348 1.17309 43
MOI_500 0.19348 0.00000 0.97961 75
MOI_5000 1.17309 0.97961 0.00000 148
numSamples 43 75 148

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.602e+00 1.523e+00 1.335e+00 43
MOI_500 1.523e+00 1.383e+00 1.167e+00 75
MOI_5000 1.335e+00 1.167e+00 9.307e-01 148
numSamples 43 75 148

ttest. adjusted p values

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.99318 0.00024 37
MOI_500 0.99318 1.00000 0.00183 44
MOI_5000 0.00024 0.00183 1.00000 28
numSamples 37 44 28

Mann-Whitney U Test, adjusted p values

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.33726 0.00000 37
MOI_500 0.33726 1.00000 0.00012 44
MOI_5000 0.00000 0.00012 1.00000 28
numSamples 37 44 28

Diffrence between means

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.70938 3.82043 37
MOI_500 0.70938 0.00000 3.11105 44
MOI_5000 3.82043 3.11105 0.00000 28
numSamples 37 44 28

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 3.782e+00 3.806e+00 3.277e+00 37
MOI_500 3.806e+00 3.799e+00 3.399e+00 44
MOI_5000 3.277e+00 3.399e+00 2.344e+00 28
numSamples 37 44 28

Here are the figures side by side

Following is the violin graph representing the distribution of start point

The Aim

This document includes double variable figures associated with samples. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases. For each graph we plot density and point versions.

The investigated parameter couples are

1.) Midpoint vs Slope 2.) Slope vs Maximum 3.) Midpoint vs Maximum

Midpoint vs Slope

Slope vs Maximum

Midpoint vs Maximum